
Bank of Biological Material
The Bank of Biological Material (BBM) stores long-term frozen or otherwise processed tissues and other human biological materials from MMCI oncology patients as well as healthy donors. BBM provides samples, including clinical information, for MMCI oncology research projects as well as national or international translational research projects. Access to such archived material, including clinical data, can facilitate and accelerate the translation of laboratory knowledge into clinical practice. The operation of BBM adheres to basic methodological and ethical principles for working with human material. The operation and utilization of BBM require active institutional support and the collaborative effort of pathology, surgery, laboratory, and clinical staff. The BBM Department not only offers clinical samples of excellent quality with unique associated data but also expertise in modern biobanking technologies.
Large Research Infrastructure BBMRI.cz
Since 2010, the BBM at MMCI has participated in and coordinated the Czech National Node of Biobanks (BBMRI.cz), a large research infrastructure within the pan-European network BBMRI-ERIC (Biobanking and Biomolecular Resources Research Infrastructure – European Research Infrastructure Consortium). This initiative facilitates the easier selection and searching of biological samples, as well as communication among biobanks and applicants. Our biobanking and IT experts have played key roles in developing online tools such as Negotiator, Federated Search, Directory, and Locator. These tools aid in harmonizing and consolidating all necessary information about samples, including clinical and laboratory data. One of the primary objectives of this biobank network is to integrate legal, ethical, and societal principles, alongside optimizing and standardizing procedures to achieve minimum quality management standards in accordance with EU guidelines for all BBMRI.cz members.
For more details visit bbmri.cz
1Contacts
T +420 543 133 318 (Mgr. Eva Růčková, Ph.D.)
T +420 543 133 346 (RNDr. Kateřina Nováková, Ph.D.)
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2Where to find us
Morávek pavillion (RECAMO)

3People
Management →
Výkonný ředitel Banky biologického materiálu
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+420 543 13 3321
+420 543 13 3306
Staff →
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+420 543 13 3317
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+420 543 13 3346
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+420 543 13 6701
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+420 543 13 6715
+420 543 13 6705
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+420 543 13 6605
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+420 543 13 6703
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+420 543 13 3346
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+420 543 13 3346
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+420 543 13 3319
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+420 543 13 3317
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+420 543 13 3318
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4Research projects
Research projects →
MEYS, Projects of Large Research Infrastructures; reg. no. LM2023033; 2023–2026
Czech biobank network (BBMRI.cz)
Investigator: doc. Mgr. Roman Hrstka, Ph.D.
MEYS, P JAC; reg. no.: CZ.02.01.01/00/23_015/0008196; 04/2024–12/2026
Development and Modernisation of the National Biobank Network (BBMRInv)
Investigator: doc. Mgr. Roman Hrstka, Ph.D.
MEYS, INTER-EXCELLENCE II; reg. no. LUC23033; 09/2023–09/2025
The effects of radiation and hypoxia on head and neck cancer cells shaping the neutrophil heterogeneity
Co-investigator: doc. Mgr. Roman Hrstka, Ph.D.
EU, Horizon 2020 (H2020-WIDESPREAD-2018-2020); grant agreement no.: 857560; 01/2020–12/2026
Delving deeper into the study of environment effects on human health (CETOCOEN Excellence)
Co-investigator: doc. Mgr. Roman Hrstka, Ph.D.
EU, European Cooperation in Science and Technology (COST); grant agreement no.: CA20117; 10/2021–10/2025
Converting molecular profiles of myeloid cells into biomarkers for inflammation and cancer (Mye-InfoBank)
Co-investigator: doc. Mgr. Roman Hrstka, Ph.D.
EU, Horizon Europe (HORIZON-INFRA-2021-SERV-01-01); grant agreement no. 101058620; 2022–2025
Providing cutting edge cancer research services across Europe (canSERV)
Co-investigator: doc. Mgr. Roman Hrstka, Ph.D.
EU, Horizon Europe (HORIZON-INFRA-2023-DEV-01); ID: 101131701; 02/2024–12/2026
Accelerating datafication for support of EU health priorities, greening of biobanks and integrated approach to “One Health” (EvolveBBMRI)
Co-investigator: doc. Mgr. Roman Hrstka, Ph.D.
EU, Horizon Europe (HORIZON-INFRA-2024-TECH-01); ID: 101131701; 01/2025–12/2028
Unlocking RI potential with Scalable AI and Data (RI-SCALE)
Co-investigator: doc. Mgr. Roman Hrstka, Ph.D.
5Project BBMRInv
About project:
Development and Modernisation of the National Biobank Network (BBMRInv)
Registration number: CZ.02.01.01/00/23_015/0008196
Implementation period: 01.04.2024 - 31.12.2026
Provider: Ministry of Education, Youth and Sports
Programme Johannes Amos Comenius (P JAC)
Budget: 184 510 030,00 CZK
Partner institutions: Charles University
Institute of Hematology and Blood Transfusion
Aims of the project:
The BBMRI.cz Biobanking and Biomolecular resources Research Infrastructure of the Czech Republic is conceived as a network of individual biobanks (BBM) whose primary task is to acquire, process and store human biological material and data from patients with a wide range of socially important diseases for future research in the medical and biological sciences. Biobanking is a progressive field and without sustained investment in research infrastructure, high quality and competitive research activities cannot be realised. The aim of the project is to upgrade instrumentation and software upgrades that will lead to innovation of processes that are standard in biobanks participating in the BBMRI.cz large research infrastructure. At the same time, it will also enable the development of processes directly related to the processing of biological material and data for scientific purposes, which will result in additional services to the scientific community and increased competitiveness at the international level.

6Publications
Publications in 2025 →
Burkon P, Selingerova I, Vrzal M, Holanek M, Coufal O, Polachova K, Andraskova V, Jhawar SR, Slampa P, Kazda T, Slavik M. Quality of life in early breast cancer patients after adjuvant accelerated partial-breast irradiation (APBI) in randomized trial. Sci Rep. 2025 Jan 9;15(1):1387. doi: 10.1038/s41598-025-85342-2.
Hrstka R, Zavadil-Kokas F, Moukova L, Kolarova T, Shahidianakbar M, Anton M, Ovesna P, Munzova D, Bednarikova M, Bretova P, Minar L, Hausnerova J, Weinberger V. Genetic analysis of uterine lavage fluids to identify women at high risk of endometrial cancer. BMC Res Notes. 2025 Mar 18;18(1):117. doi: 10.1186/s13104-025-07173-8.
Kacová R, Houfek T, Horký O, Kuráň J, Tomášik R, Růžička M, Hrstka R, Nováček V, Dudová Z. Integration, Cataloguing and Management of Biobanking and Clinical Data Using FAIR Genomes Metadata Schema. Data Intelligence. 2025;7(1):163-184. doi: 10.3724/2096-7004.di.2025.0005.
Moranova L, Strmiskova J, Ondraskova K, Bardelcik M, Cwik M, Kiss I, Hrstka R, Bartosik M. Electrochemical Detection of BRAF V600E Mutation in a Liquid Biopsy Format: LAMPing the Way to an Improved Diagnostics and Treatment. Adv Mater Technol. 2025;??:2401404. doi: 10.1002/admt.202401404. epub (IF2023: 6,4; Q1)
Němejcová K, Šafanda A, Kendall Bártů M, Hájková N, Drozenová J, Fabian P, Laco J, Matěj R, Méhes G, Škapa P, Stružinská I, Dundr P. HER2 Status in Low-grade Serous Ovarian Tumors. Int J Gynecol Pathol. 2025 Jul 30. doi: 10.1097/PGP.0000000000001059. Epub ahead of print. (1,6; Q3)
Němejcová K, Hájková N, Krkavcová E, Kendall Bártů M, Michálková R, Šafanda A, Švajdler M, Shatokhina T, Laco J, Matěj R, Hausnerová J, Škarda J, Náležinská M, Zima T, Dundr P. A molecular and immunohistochemical study of 37 cases of ovarian Sertoli-Leydig cell tumor. Virchows Arch. 2025 Nov 27. doi: 10.1007/s00428-024-03984-5. Epub ahead of print.
Pavlíčková K, Hojný J, Waldauf P, Dundr P, Hájková N, Švajdler M, Fabian P, Zambo IS, Flídrová M, Laco J, Hornychová H, Delongová P, Škarda J, Hrudka J, Matěj R. Correlation between p53 immunoexpression and TP53 mutation status in extrapulmonary small cell neuroendocrine carcinomas and its association with patient survival. Virchows Arch. 2025 Jan 23. doi: 10.1007/s00428-025-04024-6. Epub ahead of print.
Sebuyoya R, Sevcikova S, Yusuf B, Bartosik M. Integrating isothermal amplification techniques and LNA-based AI-assisted electrochemical bioassay for analysis of KRAS G12V point mutation. Talanta. 2025 Feb 7;288:127709. doi: 10.1016/j.talanta.2025.127709.
Seidler D, Winter L, Karlíková M, Topolčan O, Steiger K, Nováková K, Burkhardt R, Niedermair T, Brochhausen C. Bridging Financial Challenges in Young Biobanks-Funding Strategies from the Central Biobank Regensburg. Biopreserv Biobank. 2025 Dec 12. doi: 10.1089/bio.2023.0129. Epub ahead of print. (IF2023: 1,2; Q3)
Burkon P, Selingerova I, Vrzal M, Holanek M, Coufal O, Polachova K, Andraskova V, Jhawar SR, Slampa P, Kazda T, Slavik M. Quality of life in early breast cancer patients after adjuvant accelerated partial-breast irradiation (APBI) in randomized trial. Sci Rep. 2025 Jan 9;15(1):1387. doi: 10.1038/s41598-025-85342-2.
Hrstka R, Zavadil-Kokas F, Moukova L, Kolarova T, Shahidianakbar M, Anton M, Ovesna P, Munzova D, Bednarikova M, Bretova P, Minar L, Hausnerova J, Weinberger V. Genetic analysis of uterine lavage fluids to identify women at high risk of endometrial cancer. BMC Res Notes. 2025 Mar 18;18(1):117. doi: 10.1186/s13104-025-07173-8.
Kacová R, Houfek T, Horký O, Kuráň J, Tomášik R, Růžička M, Hrstka R, Nováček V, Dudová Z. Integration, Cataloguing and Management of Biobanking and Clinical Data Using FAIR Genomes Metadata Schema. Data Intelligence. 2025;7(1):163-184. doi: 10.3724/2096-7004.di.2025.0005.
Moranova L, Strmiskova J, Ondraskova K, Bardelcik M, Cwik M, Kiss I, Hrstka R, Bartosik M. Electrochemical Detection of BRAF V600E Mutation in a Liquid Biopsy Format: LAMPing the Way to an Improved Diagnostics and Treatment. Adv Mater Technol. 2025;??:2401404. doi: 10.1002/admt.202401404. epub (IF2023: 6,4; Q1)
Němejcová K, Šafanda A, Kendall Bártů M, Hájková N, Drozenová J, Fabian P, Laco J, Matěj R, Méhes G, Škapa P, Stružinská I, Dundr P. HER2 Status in Low-grade Serous Ovarian Tumors. Int J Gynecol Pathol. 2025 Jul 30. doi: 10.1097/PGP.0000000000001059. Epub ahead of print. (1,6; Q3)
Němejcová K, Hájková N, Krkavcová E, Kendall Bártů M, Michálková R, Šafanda A, Švajdler M, Shatokhina T, Laco J, Matěj R, Hausnerová J, Škarda J, Náležinská M, Zima T, Dundr P. A molecular and immunohistochemical study of 37 cases of ovarian Sertoli-Leydig cell tumor. Virchows Arch. 2025 Nov 27. doi: 10.1007/s00428-024-03984-5. Epub ahead of print.
Pavlíčková K, Hojný J, Waldauf P, Dundr P, Hájková N, Švajdler M, Fabian P, Zambo IS, Flídrová M, Laco J, Hornychová H, Delongová P, Škarda J, Hrudka J, Matěj R. Correlation between p53 immunoexpression and TP53 mutation status in extrapulmonary small cell neuroendocrine carcinomas and its association with patient survival. Virchows Arch. 2025 Jan 23. doi: 10.1007/s00428-025-04024-6. Epub ahead of print.
Sebuyoya R, Sevcikova S, Yusuf B, Bartosik M. Integrating isothermal amplification techniques and LNA-based AI-assisted electrochemical bioassay for analysis of KRAS G12V point mutation. Talanta. 2025 Feb 7;288:127709. doi: 10.1016/j.talanta.2025.127709.
Seidler D, Winter L, Karlíková M, Topolčan O, Steiger K, Nováková K, Burkhardt R, Niedermair T, Brochhausen C. Bridging Financial Challenges in Young Biobanks-Funding Strategies from the Central Biobank Regensburg. Biopreserv Biobank. 2025 Dec 12. doi: 10.1089/bio.2023.0129. Epub ahead of print. (IF2023: 1,2; Q3)
Publications in 2024 →
Bartosik M, Moranova L, Izadi N, Strmiskova J, Sebuyoya R, Holcakova J, Hrstka R. Advanced technologies towards improved HPV diagnostics. J Med Virol. 2024 Feb;96(2):e29409. doi: 10.1002/jmv.29409. (IF2023: 6,8; Q1)
Benesova I, Nenutil R, Urminsky A, Lattova E, Uhrik L, Grell P, Kokas FZ, Halamkova J, Zdrahal Z, Vojtesek B, Novotny MV, Hernychova L. N-glycan profiling of tissue samples to aid breast cancer subtyping. Sci Rep. 2024 Jan 3;14(1):320. doi: 10.1038/s41598-023-51021-3. (IF2023: 3,8; Q1)
Bílek O, Selingerová I, Kysela M, Jedlička V, Kazda T, Berkovcová J, Turčáni P, Poprach A, Kiss I, Svoboda M, Zdražilová Dubská L. Aktuální klinické charakteristiky a léčebné postupy karcinomu plic v onkologickém centru v České republice z reálné praxe – data z registru Masarykova onkologického ústavu z let 2018–2022. Klin Onkol 2024;37(6):433-444. doi: 10.48095/ccko2024433. (IF2023: bez IF; Q4)
Burkon P, Selingerova I, Slavik M, Holanek M, Vrzal M, Coufal O, Polachova K, Muller P, Slampa P, Kazda T. Toxicity of external beam accelerated partial-breast irradiation (APBI) in adjuvant therapy of early-stage breast cancer: prospective randomized study. Radiat Oncol. 2024 Feb 3;19(1):17. doi: 10.1186/s13014-024-02412-x. (IF2023: 3,3; Q1)
Fadrus J, Vybíhal V, Roskova I, Selingerová I, Smrcka M, Jancalek R, Šána J, Slabý O, Pospíšil P, Hynková L, Garčic J, Belanová R, Křístek J, Sprlakova-Pukova A, Mackerle Z, Juran V, Sova M, Neuman E, Valekova H, Lakomý R, Holánek M, Hrstka R, Svajdova M, Poláchová K, Kolouskova I, Šlampa P, Kazda T. Adjuvant radiotherapy after brain metastasectomy: analysis of consecutive cohort of 118 patients from real world practice. Rep Pract Oncol Radiother. 2024;29(1):30-41. doi: 10.5603/rpor.99362. (IF2023: 1,2; Q3)
Hamala V, Ondrášková K, Červenková Šťastná L, Krčil A, Müllerová M, Kurfiřt M, Hiršová K, Holčáková J, Gyepes R, Císařová I, Bernášková J, Hrstka R, Karban J. Improving the anticancer activity of fluorinated glucosamine and galactosamine analogs by attachment of a ferrocene or ruthenium tetrazene motif. Appl Organomet Chem. 2024;38(5):e7399. doi: 10.1002/aoc.7399. (IF2023: 3,7; Q2)
Holikova K, Selingerova I, Pospisil P, Bulik M, Hynkova L, Kolouskova I, Hnidakova L, Burkon P, Slavik M, Sana J, Holecek T, Vanicek J, Slampa P, Jancalek R, Kazda T. Hippocampal subfield volumetric changes after radiotherapy for brain metastases. Neurooncol Adv. 2024 Mar 20;6(1):vdae040. doi: 10.1093/noajnl/vdae040. (IF2023: 3,7; Q1)
Izadi N, Strmiskova J, Anton M, Hausnerova J, Bartosik M. LAMP-based electrochemical platform for monitoring HPV genome integration at the mRNA level associated with higher risk of cervical cancer progression. J Med Virol. 2024 Oct;96(10):e70008. doi: 10.1002/jmv.70008. (IF2023: 6,8; Q1)
Jochmanová E, Nováková K, Růčková E, Hrstka R. České biobanky - zdroj kvalitního biologického materiálu. Florence 2014;20(2):84-86. (bez IF)
Kendall Bártů M, Němejcová K, Michálková R, Bui QH, Drozenová J, Fabian P, Fadare O, Hausnerová J, Laco J, Matěj R, Méhes G, Šafanda A, Singh N, Škapa P, Špůrková Z, Stolnicu S, Švajdler M, Lax SF, McCluggage WG, Dundr P. Neuroendocrine Marker Expression in Primary Non-neuroendocrine Epithelial Tumors of the Ovary: A Study of 551 Cases. Int J Gynecol Pathol. 2024 Mar 1;43(2):123-133. doi: 10.1097/PGP.0000000000000962. (IF2023: 1,6; Q3)
Lapcik P, Synkova K, Janacova L, Bouchalova P, Potesil D, Nenutil R, Bouchal P. A hybrid DDA/DIA-PASEF based assay library for a deep proteotyping of triple-negative breast cancer. Sci Data. 2024 Jul 18;11(1):794. doi: 10.1038/s41597-024-03632-2. (IF2023: 5,8; Q1)
Peterka O, Maccelli A, Jirásko R, Vaňková Z, Idkowiak J, Hrstka R, Wolrab D, Holčapek M. HILIC/MS quantitation of low-abundant phospholipids and sphingolipids in human plasma and serum: Dysregulation in pancreatic cancer. Anal Chim Acta. 2024 Feb 1;1288:342144. doi: 10.1016/j.aca.2023.342144. (IF2023: 5,7; Q1)
Povedano E, Ruiz-Valdepeñas Montiel V, Sebuyoya R, Torrente-Rodríguez RM, Garranzo-Asensio M, Montero-Calle A, Pingarrón JM, Barderas R, Bartosik M, Campuzano S. Bringing to Light the Importance of the miRNA Methylome in Colorectal Cancer Prognosis Through Electrochemical Bioplatforms. Anal Chem. 2024 Feb 13;96(11):4580–4588. doi: 10.1021/acs.analchem.3c05474. (IF2023: 6,7; Q1)
Rihacek M, Wagnerova A, Halámková J, Paehalova L, Rihackova E, Boucek L, Kapounkova K, Hrnčiříková I, Kiss I. The impact of supervised and home exercise activity intervention on circulating immune cell numbers in cancer patients. Helyion. 2024;10(20):e39320. doi: 10.1016/j.heliyon.2024.e39320. (IF2023: 3,4; Q1).
Selingerova I, Holikova K, Chodur T, Hynkova L, Pospisil P, Bulik M, Belanova R, Siffelova K, Kolouskova I, Slavik M, Burkon P, Hrstka R, Jancalek R, Sana J, Slampa P, Kazda T. Challenges with hippocampal MR spectroscopy as a surrogate for pre-radiotherapy assessment of neurocognitive impairment in patients with brain metastasis. Biomed Pap Med Fac Univ Palacky Olomouc Czech Repub. 2024 Apr 15. doi: 10.5507/bp.2024.012. Epub ahead of print. (IF2023: 0,7; Q4)
Stružinská I, Hájková N, Hojný J, Krkavcová E, Michálková R, Bui QH, Matěj R, Laco J, Drozenová J, Fabian P, Škapa P, Špůrková Z, Cibula D, Frühauf F, Jirásek T, Zima T, Méhes G, Kendall Bártů M, Němejcová K, Dundr P. Somatic Genomic and Transcriptomic Characterization of Primary Ovarian Serous Borderline Tumors and Low-Grade Serous Carcinomas. J Mol Diagn. 2024 Apr;26(4):257-266. doi: 10.1016/j.jmoldx.2023.12.004. (IF2023: 3,4; Q1)
Vychytilova-Faltejskova P, Vilmanova S, Pifkova L, Catela Ivković T, Mᶏdrzyk M, Jugas R, Machackova T, Kotoucek J, Sachlova M, Bohovicova L, Stanek T, Halamkova J, Kiss I, Slaby O. Optimized procedure for high-throughput transcriptome profiling of small extracellular vesicles isolated from low volume serum samples. Clin Chem Lab Med. 2024 Jul 31;62(1):157-167. doi: 10.1515/cclm-2023-0610. (IF2023: 3,8; Q1)
Bartosik M, Moranova L, Izadi N, Strmiskova J, Sebuyoya R, Holcakova J, Hrstka R. Advanced technologies towards improved HPV diagnostics. J Med Virol. 2024 Feb;96(2):e29409. doi: 10.1002/jmv.29409. (IF2023: 6,8; Q1)
Benesova I, Nenutil R, Urminsky A, Lattova E, Uhrik L, Grell P, Kokas FZ, Halamkova J, Zdrahal Z, Vojtesek B, Novotny MV, Hernychova L. N-glycan profiling of tissue samples to aid breast cancer subtyping. Sci Rep. 2024 Jan 3;14(1):320. doi: 10.1038/s41598-023-51021-3. (IF2023: 3,8; Q1)
Bílek O, Selingerová I, Kysela M, Jedlička V, Kazda T, Berkovcová J, Turčáni P, Poprach A, Kiss I, Svoboda M, Zdražilová Dubská L. Aktuální klinické charakteristiky a léčebné postupy karcinomu plic v onkologickém centru v České republice z reálné praxe – data z registru Masarykova onkologického ústavu z let 2018–2022. Klin Onkol 2024;37(6):433-444. doi: 10.48095/ccko2024433. (IF2023: bez IF; Q4)
Burkon P, Selingerova I, Slavik M, Holanek M, Vrzal M, Coufal O, Polachova K, Muller P, Slampa P, Kazda T. Toxicity of external beam accelerated partial-breast irradiation (APBI) in adjuvant therapy of early-stage breast cancer: prospective randomized study. Radiat Oncol. 2024 Feb 3;19(1):17. doi: 10.1186/s13014-024-02412-x. (IF2023: 3,3; Q1)
Fadrus J, Vybíhal V, Roskova I, Selingerová I, Smrcka M, Jancalek R, Šána J, Slabý O, Pospíšil P, Hynková L, Garčic J, Belanová R, Křístek J, Sprlakova-Pukova A, Mackerle Z, Juran V, Sova M, Neuman E, Valekova H, Lakomý R, Holánek M, Hrstka R, Svajdova M, Poláchová K, Kolouskova I, Šlampa P, Kazda T. Adjuvant radiotherapy after brain metastasectomy: analysis of consecutive cohort of 118 patients from real world practice. Rep Pract Oncol Radiother. 2024;29(1):30-41. doi: 10.5603/rpor.99362. (IF2023: 1,2; Q3)
Hamala V, Ondrášková K, Červenková Šťastná L, Krčil A, Müllerová M, Kurfiřt M, Hiršová K, Holčáková J, Gyepes R, Císařová I, Bernášková J, Hrstka R, Karban J. Improving the anticancer activity of fluorinated glucosamine and galactosamine analogs by attachment of a ferrocene or ruthenium tetrazene motif. Appl Organomet Chem. 2024;38(5):e7399. doi: 10.1002/aoc.7399. (IF2023: 3,7; Q2)
Holikova K, Selingerova I, Pospisil P, Bulik M, Hynkova L, Kolouskova I, Hnidakova L, Burkon P, Slavik M, Sana J, Holecek T, Vanicek J, Slampa P, Jancalek R, Kazda T. Hippocampal subfield volumetric changes after radiotherapy for brain metastases. Neurooncol Adv. 2024 Mar 20;6(1):vdae040. doi: 10.1093/noajnl/vdae040. (IF2023: 3,7; Q1)
Izadi N, Strmiskova J, Anton M, Hausnerova J, Bartosik M. LAMP-based electrochemical platform for monitoring HPV genome integration at the mRNA level associated with higher risk of cervical cancer progression. J Med Virol. 2024 Oct;96(10):e70008. doi: 10.1002/jmv.70008. (IF2023: 6,8; Q1)
Jochmanová E, Nováková K, Růčková E, Hrstka R. České biobanky - zdroj kvalitního biologického materiálu. Florence 2014;20(2):84-86. (bez IF)
Kendall Bártů M, Němejcová K, Michálková R, Bui QH, Drozenová J, Fabian P, Fadare O, Hausnerová J, Laco J, Matěj R, Méhes G, Šafanda A, Singh N, Škapa P, Špůrková Z, Stolnicu S, Švajdler M, Lax SF, McCluggage WG, Dundr P. Neuroendocrine Marker Expression in Primary Non-neuroendocrine Epithelial Tumors of the Ovary: A Study of 551 Cases. Int J Gynecol Pathol. 2024 Mar 1;43(2):123-133. doi: 10.1097/PGP.0000000000000962. (IF2023: 1,6; Q3)
Lapcik P, Synkova K, Janacova L, Bouchalova P, Potesil D, Nenutil R, Bouchal P. A hybrid DDA/DIA-PASEF based assay library for a deep proteotyping of triple-negative breast cancer. Sci Data. 2024 Jul 18;11(1):794. doi: 10.1038/s41597-024-03632-2. (IF2023: 5,8; Q1)
Peterka O, Maccelli A, Jirásko R, Vaňková Z, Idkowiak J, Hrstka R, Wolrab D, Holčapek M. HILIC/MS quantitation of low-abundant phospholipids and sphingolipids in human plasma and serum: Dysregulation in pancreatic cancer. Anal Chim Acta. 2024 Feb 1;1288:342144. doi: 10.1016/j.aca.2023.342144. (IF2023: 5,7; Q1)
Povedano E, Ruiz-Valdepeñas Montiel V, Sebuyoya R, Torrente-Rodríguez RM, Garranzo-Asensio M, Montero-Calle A, Pingarrón JM, Barderas R, Bartosik M, Campuzano S. Bringing to Light the Importance of the miRNA Methylome in Colorectal Cancer Prognosis Through Electrochemical Bioplatforms. Anal Chem. 2024 Feb 13;96(11):4580–4588. doi: 10.1021/acs.analchem.3c05474. (IF2023: 6,7; Q1)
Rihacek M, Wagnerova A, Halámková J, Paehalova L, Rihackova E, Boucek L, Kapounkova K, Hrnčiříková I, Kiss I. The impact of supervised and home exercise activity intervention on circulating immune cell numbers in cancer patients. Helyion. 2024;10(20):e39320. doi: 10.1016/j.heliyon.2024.e39320. (IF2023: 3,4; Q1).
Selingerova I, Holikova K, Chodur T, Hynkova L, Pospisil P, Bulik M, Belanova R, Siffelova K, Kolouskova I, Slavik M, Burkon P, Hrstka R, Jancalek R, Sana J, Slampa P, Kazda T. Challenges with hippocampal MR spectroscopy as a surrogate for pre-radiotherapy assessment of neurocognitive impairment in patients with brain metastasis. Biomed Pap Med Fac Univ Palacky Olomouc Czech Repub. 2024 Apr 15. doi: 10.5507/bp.2024.012. Epub ahead of print. (IF2023: 0,7; Q4)
Stružinská I, Hájková N, Hojný J, Krkavcová E, Michálková R, Bui QH, Matěj R, Laco J, Drozenová J, Fabian P, Škapa P, Špůrková Z, Cibula D, Frühauf F, Jirásek T, Zima T, Méhes G, Kendall Bártů M, Němejcová K, Dundr P. Somatic Genomic and Transcriptomic Characterization of Primary Ovarian Serous Borderline Tumors and Low-Grade Serous Carcinomas. J Mol Diagn. 2024 Apr;26(4):257-266. doi: 10.1016/j.jmoldx.2023.12.004. (IF2023: 3,4; Q1)
Vychytilova-Faltejskova P, Vilmanova S, Pifkova L, Catela Ivković T, Mᶏdrzyk M, Jugas R, Machackova T, Kotoucek J, Sachlova M, Bohovicova L, Stanek T, Halamkova J, Kiss I, Slaby O. Optimized procedure for high-throughput transcriptome profiling of small extracellular vesicles isolated from low volume serum samples. Clin Chem Lab Med. 2024 Jul 31;62(1):157-167. doi: 10.1515/cclm-2023-0610. (IF2023: 3,8; Q1)
Publications in 2023 →
Bohosova J, Kozelkova K, Al Tukmachi D, Trachtova K, Naar O, Ruckova M, Kolarikova E, Stanik M, Poprach A, Slaby O. Long non-coding RNAs enable precise diagnosis and prediction of early relapse after nephrectomy in patients with renal cell carcinoma. J Cancer Res Clin Oncol. 2023 Aug;149(10):7587-7600. doi: 10.1007/s00432-023-04700-7. (IF2022: 3,6; Q2)
Gallo M, Krajňanský V, Nenutil R, Holub P, Brázdil B. Shedding Light on the Black Box of a Neural Network Used to Detect Prostate Cancer in Whole Slide Images by Occlusion-Based Explainability. N Biotechnol. 2023 Oct 2;78: 52-67. doi: 10.1016/j.nbt.2023.09.008. (IF2022: 5,4; Q1)
Grell P, Borilova S, Fabian P, Selingerova I, Novak D, Muller P, Kiss I, Vyzula R. FoxP3 Expression in Tumor-Infiltrating Lymphocytes as Potential Predictor of Response to Immune Checkpoint Inhibitors in Patients with Advanced Melanoma and Non-Small Cell Lung Cancer. Cancers (Basel). 2023 Mar 22;15(6):1901. doi: 10.3390/cancers15061901. (IF2022: 5,2; Q2)
Halámková J, Bohovicová L, Pehalová L, Kazda T, Goněc R, Staněk T, Mouková L, Adámková Krákorová D, Kozáková Š, Svoboda M, Demlová R, Gabrielová L, Hernychová L, Kiss I. The risk of second primary malignancies in colorectal cancer patients using calcium channel blockers. Sci Rep. 2023 Mar 1;13(1):3490. doi: 10.1038/s41598-023-29535-7. (IF2022: 4,6; Q2)
Holub P, Müller H, Bíl T, Pireddu L, Plass M, Prasser F, Schlünder I, Zatloukal K, Nenutil R, Brázdil T. Privacy risks of whole-slide image sharing in digital pathology. Nat Commun. 2023 May 4;14(1):2577. doi: 10.1038/s41467-023-37991-y. (IF2022: 16,6; Q1)
Idkowiak J, Jirásko R, Kolářová D, Bártl J, Hájek T, Antonelli M, Vaňková Z, Wolrab D, Hrstka R, Študentová H, Melichar B, Pešková K, Holčapek M. Robust and high-throughput lipidomic quantitation of human blood samples using flow injection analysis with tandem mass spectrometry for clinical use. Anal Bioanal Chem. 2023 Feb;415(5):935-951. doi: 10.1007/s00216-022-04490-w. (IF2022: 4,3; Q1)
Kral J, Jelinkova S, Zemankova P, Vocka M, Borecka M, Cerna L, Cerna M, Dostalek L, Duskova P, Foretova L, Havranek O, Horackova K, Hovhannisyan M, Chvojka S, Kalousova M, Kosarova M, Koudova M, Krutilkova V, Machackova E, Nehasil P, Novotny J, Otahalova B, Puchmajerova A, Safarikova M, Slama J, Stranecky V, Subrt I, Tavandzis S, Zikan M, Zima T, Soukupova J, Kleiblova P, Kleibl Z, Janatova M. Germline multigene panel testing of patients with endometrial cancer. Oncol Lett. 2023 Apr 12;25(6):216. doi: 10.3892/ol.2023.13802. (IF2022: 2,9; Q3)
Moráňová L, Bartošík M, Strmisková J, Nováková K. Elektrochemická analýza klinických vzorků – cesta k translačnímu výzkumu. Chem. Listy 2023;117(10):595-603. doi: 10.54779/chl20230595. (IF2022: 0,6; Q4)
Ondraskova K, Sebuyoya R, Moranova L, Holcakova J, Vonka P, Hrstka R, Bartosik M. Electrochemical biosensors for analysis of DNA point mutations in cancer research. Anal Bioanal Chem. 2023 Mar;415(6):1065-1085. doi: 10.1007/s00216-022-04388-7. (IF2022: 4,3; Q1)
Sebuyoya R, Valverde A, Moranova L, Strmiskova J, Hrstka R, Ruiz-Valdepeñas Montiel V, Pingarrón JM, Barderas R, Campuzano S, Bartosik M. Dual detection system for cancer-associated point mutations assisted by a multiplexed LNA-based amperometric bioplatform coupled with rolling circle amplification. Sens Actuators B Chem. 2023; 394:134375. doi: 10.1016/j.snb.2023.134375. (IF2022: 8,4; Q1)
Vonka P, Rarova L, Bazgier V, Tichy V, Kolarova T, Holcakova J, Berka K, Kvasnica M, Oklestkova J, Kudova E, Strnad M, Hrstka R. Small change - big consequence: The impact of C15-C16 double bond in a D‑ring of estrone on estrogen receptor activity. J Steroid Biochem Mol Biol. 2023 Oct;233:106365. doi: 10.1016/j.jsbmb.2023.106365. (IF2022: 4,1; Q2)
Publications in 2022 →
Bouchalova P, Sommerova L, Potesil D, Martisova A, Lapcik P, Koci V, Scherl A, Vonka P, Planas-Iglesias J, Chevet E, Bouchal P, Hrstka R. Characterization of the AGR2 interactome uncovers new players of Protein Disulfide Isomerase network in cancer cells. Mol Cell Proteomics 2022:21(2):100188. doi: 10.1016/j.mcpro.2021.100188. (IF2021: 7,381; Q1)
Burkoň P, Trna J, Slávik M, Němeček R, Kazda T, Pospíšil P, Dastych M, Eid M, Novotný I, Procházka T, Vrzal M. Stereotactic Body Radiotherapy (SBRT) of Pancreatic Cancer-A Critical Review and Practical Consideration. Biomedicines. 2022 Oct 4;10(10):2480. doi: 10.3390/biomedicines10102480. (IF2021: 4,757; Q2)
Brázdil T, Gallo M, Nenutil R, Kubanda A, Toufar M, Holub P. Automated annotations of epithelial cells and stroma in hematoxylin-eosin-stained whole-slide images using cytokeratin re-staining. J Pathol Clin Res. 2022 Mar;8(2):129-142. doi: 10.1002/cjp2.249. (IF2021: 4,373; Q1)
Halámková J, Bohovicová L, Pehalová L, Goněc R, Staněk T, Kazda T, Mouková L, Krákorová DA, Kozáková Š, Svoboda M, Demlová R, Kiss I. Use of Hypolipidemic Drugs and the Risk of Second Primary Malignancy in Colorectal Cancer Patients. Cancers (Basel). 2022 Mar 27;14(7):1699. doi: 10.3390/cancers14071699. (IF2021: 6,575; Q1)
Holanek M, Selingerova I, Fabian P, Coufal O, Zapletal O, Petrakova K, Kazda T, Hrstka R, Poprach A, Zvarikova M, Bilek O, Svoboda M. Biomarker Dynamics and Long-Term Treatment Outcomes in Breast Cancer Patients with Residual Cancer Burden after Neoadjuvant Therapy. Diagnostics (Basel). 2022 Jul 18;12(7):1740. doi: 10.3390/diagnostics12071740. (IF2021: 3,992; Q1)
Moranova L, Stanik M, Hrstka R, Campuzano S, Bartosik M. Electrochemical LAMP-based assay for detection of RNA biomarkers in prostate cancer. Talanta 2022; 238(Part 2):123064. doi: 10.1016/j.talanta.2021.123064. (IF2021: 6,556; Q1)
Obermannova R, Selingerova I, Rehak Z, Jedlicka V, Slavik M, Fabian P, Novotny I, Zemanova M, Studentova H, Grell P, Zdrazilova Dubska L, Demlova R, Harustiak T, Hejnova R, Kiss I, Vyzula R. PET/CT-tailored treatment of locally advanced oesophago-gastric junction adenocarcinoma: a report on the feasibility of the multicenter GastroPET study. Ther Adv Med Oncol. 2022 Jan 5;13:17588359211065153. doi: 10.1177/17588359211065153. (IF2021: 8,168; Q1)
Rihacek M, Selingerova I, Kocak I, Kocakova I, Rihackova E, Valik D, Sterba J. Sunitinib-Induced Elevation of Mean Corpuscular Volume (MCV)-Exploring Its Possible Clinical Relevance in Cancer Patients. Curr Oncol. 2022 Jun 7;29(6):4138-4147. doi: 10.3390/curroncol29060330. (IF2021: 3,109; Q3)
Sebuyoya R, Moranova L, Izadi N, Moran L, Hrstka R, Anton M, Bartosik M. Electrochemical DNA biosensor coupled to LAMP reaction for early diagnostics of cervical precancerous lesions. Biosens Bioelectron X 2022;12:100224. doi: 10.1016/j.biosx.2022.100224. (bez IF; Q1)
Wolrab D, Jirásko R, Cífková E, Höring M, Mei D, Chocholoušková M, Peterka O, Idkowiak J, Hrnčiarová T, Kuchař L, Ahrends R, Brumarová R, Friedecký D, Vivo-Truyols G, Škrha P, Škrha J, Kučera R, Melichar B, Liebisch G, Burkhardt R, Wenk MR, Cazenave-Gassiot A, Karásek P, Novotný I, Greplová K, Hrstka R, Holčapek M. Lipidomic profiling of human serum enables detection of pancreatic cancer. Nat Commun. 2022 Jan 10;13(1):124. doi: 10.1038/s41467-021-27765-9. (IF2021: 17,694; Q1)
Publications in 2021 →
Galoczova, M., Nenutil, R., Pokorna, Z., Vojtesek, B., Coates, P.J. TAp63 and ΔNp63 (p40) in prostate adenocarcinomas: ΔNp63 associates with a basal-like cancer stem cell population but not with metastasis. Virchows Arch 2021;478(4):627-636. doi: 10.1007/s00428-020-02944-z. (IF2020: 4,064; Q2)
Halamkova, J., Kazda, T., Pehalova, L., Gonec, R., Kozakova, S., Bohovicova, L., Adamkova Krakorova, D., Slaby, O., Demlova, R., Svoboda, M., Kiss, I. Second primary malignancies in colorectal cancer patients. Sci Rep 2021;11(1):2759. doi: 10.1038/s41598-021-82248-7. (IF2020: 4,380; Q1)
Halamkova, J., Kazda, T., Pehalova, L., Gonec, R., Kozakova, S., Bohovicova, L., Slaby, O., Demlova, R., Svoboda, M., Kiss, I. The Impact of Diabetes Mellitus on the Second Primary Malignancies in Colorectal Cancer Patients. Front Oncol 2021;10:573394. doi: 10.3389/fonc.2020.573394. (IF2020: 6,244; Q2)
Holanek, M., Selingerova, I., Bilek, O., Kazda, T., Fabian, P., Foretova, L., Zvarikova, M., Obermannova, R., Kolouskova, I., Coufal, O., Petrakova, K., Svoboda, M., Poprach, A. Neoadjuvant Chemotherapy of Triple-Negative Breast Cancer: Evaluation of Early Clinical Response, Pathological Complete Response Rates, and Addition of Platinum Salts Benefit Based on Real-World Evidence. Cancers (Basel) 2021;13(7):1586. doi: 10.3390/cancers13071586. (IF2020: 6,639; Q1)
Holcakova, J., Bartosik, M., Anton, M., Minar, L., Hausnerova, J., Bednarikova, M., Weinberger, V., Hrstka, R. New Trends in the Detection of Gynecological Precancerous Lesions and Early-Stage Cancers. Cancers (Basel). 2021 Dec 17;13(24):6339. doi: 10.3390/cancers13246339. (IF2020: 6,639; Q1)
Izadi, N., Sebuyoya, R., Moranova, L., Hrstka, R., Anton, M., Bartosik, M. Electrochemical bioassay coupled to LAMP reaction for determination of high-risk HPV infection in crude lysates. Anal Chim Acta. 2021 Dec 1;1187:339145. doi: 10.1016/j.aca.2021.339145. (IF2020: 6,558; Q1)
Selingerova, I., Valik, D., Gescheidtova, L., Sramek, V., Cermakova, Z., Zdrazilova-Dubska, L. Interpretive discrepancies caused by target values inter-batch variations in chemiluminescence immunoassay for SARS-CoV-2 IgM/IgG by MAGLUMI. J Med Virol 2021;93(3):1805-1809. doi: 10.1002/jmv.26612. (IF2020: 2,327; Q4)
Selingerova, I., Katina, S., Horova, I. Comparison of parametric and semiparametric survival regression models with kernel estimation. J Stat Comput Sim 2021;91(13):2717-2739. doi: 10.1080/00949655.2021.1906875. (IF2020: 1,424; Q4)
Slavik, M., Burkon, P., Selingerova, I., Krupa, P., Kazda, T., Stankova, J., Nikl, T., Hejnova, R., Rehak, Z., Osmera, P., Prochazka, T., Dvorakova, E., Pospisil, P., Grell, P., Slampa, P., Obermannova, R. Preoperative Chemoradiotherapy for Gastroesophageal Junction Adenocarcinoma Modified by PET/CT: Results of Virtual Planning Study. Medicina (Lithuania Kaunas). 2021 Dec 6;57(12):1334. doi: 10.3390/medicina57121334. (IF2020: 2,430; Q2)
Zwinsová, B., Petrov, V.A., Hrivňáková, M., Smatana, S., Micenková, L., Kazdová, N., Popovici, V., Hrstka, R., Šefr, R., Bencsiková, B., Zdražilová-Dubská, L., Brychtová, V., Nenutil, R., Vídeňská, P., Budinská, E. Colorectal Tumour Mucosa Microbiome Is Enriched in Oral Pathogens and Defines Three Subtypes That Correlate with Markers of Tumour Progression. Cancers (Basel) 2021;13(19):4799. doi: 10.3390/cancers13194799. (IF2020: 6,639; Q1)
Publications in 2020 →
Holub, P., Kozera, L., Florindi, F., Van Enckevort, E., Swert, M., Reihs, R., Wutte, A., Valík, D., Mayrhofer, M.T. BBMRI-ERIC COMMUNITY, BBMRI-ERIC's Contributions to Research and Knowledge Exchange on COVID-19. Eur J Hum Genet 2020;28(6):728-731. doi: 10.1038/s41431-020-0634-8. (IF2019: 3,540; Q1)
Kýr, M., Klement, G.L., Zdrazilova-Dubska, L., Demlova, R., Valik, D., Slaby, O., Slavc, I., Sterba, J. Editorial: Precision/Personalized Pediatric Oncology and Immune Therapies: Rather Customize Than Randomize. Front Oncol 2020;10:377. doi: 10.3389/fonc.2020.00377. (IF2019: 4,250; Q1)
Liu, Y., Nekulova, M., Nenutil, R., Horakova, I., Appleyard, M.V., Murray, K., Holcakova, J., Galoczova, M., Quinlan, P., Jordan, L.B., Purdie, C.A., Vojtesek, B., Thompson, A.M., Coates, P.J. ∆Np63/p40 correlates with the location and phenotype of basal/mesenchymal cancer stem-like cells in human ER+ and HER2+ breast cancers. J Pathol Clin Res 2020;6(1):83-93. doi: 10.1002/cjp2.149. (IF2019: 3,489; Q4)
Náležinská, M., Zdražilová Dubská, L., Valík, D., Hernychová, L., Pavlík, T., Mazalová, M., Chovanec, J., Fait, V. Úskalí laboratorních metod v ovariálním skríninku - doba "-omická"? Onkologie 2020;14(2):88-92. doi: 10.36290/xon.2020.016. (bez IF)
Silvestri, V., Foretova, L., Machackova, E. et al. Characterization of the Cancer Spectrum in Men With Germline BRCA1 and BRCA2 Pathogenic Variants: Results From the Consortium of Investigators of Modifiers of BRCA1/2 (CIMBA). JAMA Oncol 2020;6(8):1218-1230. doi: 10.1001/jamaoncol.2020.2134. (IF2019: 13,860; Q1)
Vyskočil, J. Kardiotoxicita onkologické léčby. Postgrad Med 2020;22(2):151-157. (bez IF)
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